图表学习方法为解决图形所代表的复杂的现实世界问题打开了新的可能性。但是,这些应用程序中使用的许多图包括数百万节点和数十亿个边缘,并且超出了当前方法和软件实现的功能。我们提供葡萄,这是一种用于图形处理和表示学习的软件资源,能够通过使用专业和智能数据结构,算法和快速并行实现来通过大图扩展。与最先进的软件资源相比,葡萄显示出经验空间和时间复杂性的数量级的改善,以及边缘预测和节点标签预测性能的实质和统计学上的显着改善。此外,葡萄提供了来自文献和其他来源的80,000多种图,标准化界面允许直接整合第三方库,61个节点嵌入方法,25个推理模型和3个模块化管道,以允许公平且可重复的方法比较以及用于图形处理和嵌入的库。
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An Anomaly Detection (AD) System for Self-diagnosis has been developed for Multiphase Flow Meter (MPFM). The system relies on machine learning algorithms for time series forecasting, historical data have been used to train a model and to predict the behavior of a sensor and, thus, to detect anomalies.
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Objective: Accurate visual classification of bladder tissue during Trans-Urethral Resection of Bladder Tumor (TURBT) procedures is essential to improve early cancer diagnosis and treatment. During TURBT interventions, White Light Imaging (WLI) and Narrow Band Imaging (NBI) techniques are used for lesion detection. Each imaging technique provides diverse visual information that allows clinicians to identify and classify cancerous lesions. Computer vision methods that use both imaging techniques could improve endoscopic diagnosis. We address the challenge of tissue classification when annotations are available only in one domain, in our case WLI, and the endoscopic images correspond to an unpaired dataset, i.e. there is no exact equivalent for every image in both NBI and WLI domains. Method: We propose a semi-surprised Generative Adversarial Network (GAN)-based method composed of three main components: a teacher network trained on the labeled WLI data; a cycle-consistency GAN to perform unpaired image-to-image translation, and a multi-input student network. To ensure the quality of the synthetic images generated by the proposed GAN we perform a detailed quantitative, and qualitative analysis with the help of specialists. Conclusion: The overall average classification accuracy, precision, and recall obtained with the proposed method for tissue classification are 0.90, 0.88, and 0.89 respectively, while the same metrics obtained in the unlabeled domain (NBI) are 0.92, 0.64, and 0.94 respectively. The quality of the generated images is reliable enough to deceive specialists. Significance: This study shows the potential of using semi-supervised GAN-based classification to improve bladder tissue classification when annotations are limited in multi-domain data.
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Diffusion models have achieved justifiable popularity by attaining state-of-the-art performance in generating realistic objects from seemingly arbitrarily complex data distributions, including when conditioning generation on labels. Unfortunately, however, their iterative nature renders them very computationally inefficient during the sampling process. For the multi-class conditional generation problem, we propose a novel, structurally unique framework of diffusion models which are hierarchically branched according to the inherent relationships between classes. In this work, we demonstrate that branched diffusion models offer major improvements in efficiently generating samples from multiple classes. We also showcase several other advantages of branched diffusion models, including ease of extension to novel classes in a continual-learning setting, and a unique interpretability that offers insight into these generative models. Branched diffusion models represent an alternative paradigm to their traditional linear counterparts, and can have large impacts in how we use diffusion models for efficient generation, online learning, and scientific discovery.
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In the era of digital healthcare, the huge volumes of textual information generated every day in hospitals constitute an essential but underused asset that could be exploited with task-specific, fine-tuned biomedical language representation models, improving patient care and management. For such specialized domains, previous research has shown that fine-tuning models stemming from broad-coverage checkpoints can largely benefit additional training rounds over large-scale in-domain resources. However, these resources are often unreachable for less-resourced languages like Italian, preventing local medical institutions to employ in-domain adaptation. In order to reduce this gap, our work investigates two accessible approaches to derive biomedical language models in languages other than English, taking Italian as a concrete use-case: one based on neural machine translation of English resources, favoring quantity over quality; the other based on a high-grade, narrow-scoped corpus natively written in Italian, thus preferring quality over quantity. Our study shows that data quantity is a harder constraint than data quality for biomedical adaptation, but the concatenation of high-quality data can improve model performance even when dealing with relatively size-limited corpora. The models published from our investigations have the potential to unlock important research opportunities for Italian hospitals and academia. Finally, the set of lessons learned from the study constitutes valuable insights towards a solution to build biomedical language models that are generalizable to other less-resourced languages and different domain settings.
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Crop type maps are critical for tracking agricultural land use and estimating crop production. Remote sensing has proven an efficient and reliable tool for creating these maps in regions with abundant ground labels for model training, yet these labels remain difficult to obtain in many regions and years. NASA's Global Ecosystem Dynamics Investigation (GEDI) spaceborne lidar instrument, originally designed for forest monitoring, has shown promise for distinguishing tall and short crops. In the current study, we leverage GEDI to develop wall-to-wall maps of short vs tall crops on a global scale at 10 m resolution for 2019-2021. Specifically, we show that (1) GEDI returns can reliably be classified into tall and short crops after removing shots with extreme view angles or topographic slope, (2) the frequency of tall crops over time can be used to identify months when tall crops are at their peak height, and (3) GEDI shots in these months can then be used to train random forest models that use Sentinel-2 time series to accurately predict short vs. tall crops. Independent reference data from around the world are then used to evaluate these GEDI-S2 maps. We find that GEDI-S2 performed nearly as well as models trained on thousands of local reference training points, with accuracies of at least 87% and often above 90% throughout the Americas, Europe, and East Asia. Systematic underestimation of tall crop area was observed in regions where crops frequently exhibit low biomass, namely Africa and South Asia, and further work is needed in these systems. Although the GEDI-S2 approach only differentiates tall from short crops, in many landscapes this distinction goes a long way toward mapping the main individual crop types. The combination of GEDI and Sentinel-2 thus presents a very promising path towards global crop mapping with minimal reliance on ground data.
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Algorithms and technologies are essential tools that pervade all aspects of our daily lives. In the last decades, health care research benefited from new computer-based recruiting methods, the use of federated architectures for data storage, the introduction of innovative analyses of datasets, and so on. Nevertheless, health care datasets can still be affected by data bias. Due to data bias, they provide a distorted view of reality, leading to wrong analysis results and, consequently, decisions. For example, in a clinical trial that studied the risk of cardiovascular diseases, predictions were wrong due to the lack of data on ethnic minorities. It is, therefore, of paramount importance for researchers to acknowledge data bias that may be present in the datasets they use, eventually adopt techniques to mitigate them and control if and how analyses results are impacted. This paper proposes a method to address bias in datasets that: (i) defines the types of data bias that may be present in the dataset, (ii) characterizes and quantifies data bias with adequate metrics, (iii) provides guidelines to identify, measure, and mitigate data bias for different data sources. The method we propose is applicable both for prospective and retrospective clinical trials. We evaluate our proposal both through theoretical considerations and through interviews with researchers in the health care environment.
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Brain decoding is a field of computational neuroscience that uses measurable brain activity to infer mental states or internal representations of perceptual inputs. Therefore, we propose a novel approach to brain decoding that also relies on semantic and contextual similarity. We employ an fMRI dataset of natural image vision and create a deep learning decoding pipeline inspired by the existence of both bottom-up and top-down processes in human vision. We train a linear brain-to-feature model to map fMRI activity features to visual stimuli features, assuming that the brain projects visual information onto a space that is homeomorphic to the latent space represented by the last convolutional layer of a pretrained convolutional neural network, which typically collects a variety of semantic features that summarize and highlight similarities and differences between concepts. These features are then categorized in the latent space using a nearest-neighbor strategy, and the results are used to condition a generative latent diffusion model to create novel images. From fMRI data only, we produce reconstructions of visual stimuli that match the original content very well on a semantic level, surpassing the state of the art in previous literature. We evaluate our work and obtain good results using a quantitative semantic metric (the Wu-Palmer similarity metric over the WordNet lexicon, which had an average value of 0.57) and perform a human evaluation experiment that resulted in correct evaluation, according to the multiplicity of human criteria in evaluating image similarity, in over 80% of the test set.
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Predictive coding is a message-passing framework initially developed to model information processing in the brain, and now also topic of research in machine learning due to some interesting properties. One of such properties is the natural ability of generative models to learn robust representations thanks to their peculiar credit assignment rule, that allows neural activities to converge to a solution before updating the synaptic weights. Graph neural networks are also message-passing models, which have recently shown outstanding results in diverse types of tasks in machine learning, providing interdisciplinary state-of-the-art performance on structured data. However, they are vulnerable to imperceptible adversarial attacks, and unfit for out-of-distribution generalization. In this work, we address this by building models that have the same structure of popular graph neural network architectures, but rely on the message-passing rule of predictive coding. Through an extensive set of experiments, we show that the proposed models are (i) comparable to standard ones in terms of performance in both inductive and transductive tasks, (ii) better calibrated, and (iii) robust against multiple kinds of adversarial attacks.
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Learning how to navigate among humans in an occluded and spatially constrained indoor environment, is a key ability required to embodied agent to be integrated into our society. In this paper, we propose an end-to-end architecture that exploits Socially-Aware Tasks (referred as to Risk and Social Compass) to inject into a reinforcement learning navigation policy the ability to infer common-sense social behaviors. To this end, our tasks exploit the notion of immediate and future dangers of collision. Furthermore, we propose an evaluation protocol specifically designed for the Social Navigation Task in simulated environments. This is done to capture fine-grained features and characteristics of the policy by analyzing the minimal unit of human-robot spatial interaction, called Encounter. We validate our approach on Gibson4+ and Habitat-Matterport3D datasets.
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